Tuesday, September 15, 2020

Mounting USB drives in Windows Subsystem for Linux

Windows Subsystem for Linux can use (mount):

  1. SD card
  2. USB drives
  3. CD drives (CDFS)
  4. Network drives
  5. UNC paths

Local storage / drives

Drives formatted as FAT, ExFAT or NTFS can be mounted in WSL. For this example, we assume the drive shows in Windows as F:\ If Windows changes the USB drive letter on a subsequent session, you need to repeat this process.

The commands are typed into the Windows Subsystem for Linux Terminal.

Create a mount location in WSL:

mkdir /mnt/f

Mount the drive in WSL:

mount -t drvfs f: /mnt/f

After this one-time setup, one can create and manipulate files from both Windows and WSL on the same drive.

Network storage

Here we assume:

networked storage is already showing in Windows under \\server\share

we want to access this network storage from WSL as /mnt/share

Create a mount location in WSL:

mkdir /mnt/share

Mount the network share in WSL:

mount -t drvfs '\\server\share' /mnt/share

***Note: the above text is copied from [1]. It belongs to the author who has published it on that website. 

References

1. https://www.scivision.co/mount-usb-drives-windows-subsystem-for-linux/

2. https://docs.microsoft.com/en-us/archive/blogs/wsl/file-system-improvements-to-the-windows-subsystem-for-linux

Friday, January 10, 2020

Working with R language Day 01


  1. List of built-in data sets

    data()

  2. The R Datasets Package

    help(package = "datasets")
  3. List the data sets in all *available* packages

    data(package = .packages(all.available = TRUE))
  4. List data sets including in ggplot2 package

    data(package = "ggplot2")
  5. Describe data set "movies" which is included in the "psych" package

    library(psych)
    describe(movies)
  6. Draw a pie chart using different colours schemes

    library(ggplot2)
    par(mfrow =  c(2,2)) # plot 4 pie charts in one diagram
    pie(rep(1,8), col = FALSE, main = "Blank Pie") # no colours shown
    pie(rep(1,8), main = "Default Colours")
    pie(c(1,2,3,4,5,6,7,8), col = heat.colors(7), main = "Heat Colours")
    pie(rep(1,8), col = rainbow(8), main = "Rainbow Colours")
  7. EDA

    library(ggplot2)
    library(ggplot2movies)
    library(psych)

    data("movies") # using movies data
    dim(movies)
    summary(movies)
    str(movies)
    head(movies)
    describe(movies)
    movies$rating #list values of rating column (variable)
  8. Plot a histogram of ratings and length for a random sample of 1000 movies

    library(ggplot2)
    library(ggplot2movies)
    library(ggpubr) # for ggrange()

    movies_1000_rows <- movies[sample(nrow(movies),1000),]

    rating_htg <- qplot(rating, data = movies_1000_rows, geom = "histogram", main = "Movie Ratings")

    lenth_htg <- qplot(length, data = movies_1000_rows, geom = "histogram", main = "Movie Length")

    # Display two histograms in the same figure

    ggarrange(rating_htg, lenth_htg, labels = c("A", "B"), ncol = 2, nrow = 1)
  9. Working with Data frames

    movies$unused_column <- NULL #remove column unused_column

    medianRating <- median(movies$rating)
    movies$median_rating_col <- ifelse(movies$rating > medianRating, "Larger", "Smaller")

    OR to replacing rating column with "Larger" or "Smaller" values

    movies$rating <- with(movies, ifelse(rating > medianRating, "Larger", "Smaller")
  10. # Summarise a data frame by groups in R using dplyr package

    library(ggplot2movies)
    library(dplyr) # for group_by(), select(), summarise()

    # List number of movies produced by each year

    mymovies <- movies %>%
    select(year, length, title) %>%
    group_by(year) %>%
    summarise(avg_length=mean(length), number_of_titles=n())
  11. Using apply function

    apply(movies, 2, mean)
  12. #Find all functions that has apply in the end
    apropos(".apply")





Tuesday, December 24, 2019

All current packages in R

Data sets in package ‘boot’:

acme                     Monthly Excess Returns
aids                     Delay in AIDS Reporting in England and Wales
aircondit                Failures of Air-conditioning Equipment
aircondit7               Failures of Air-conditioning Equipment
amis                     Car Speeding and Warning Signs
aml                      Remission Times for Acute Myelogenous Leukaemia
beaver                   Beaver Body Temperature Data
bigcity                  Population of U.S. Cities
brambles                 Spatial Location of Bramble Canes
breslow                  Smoking Deaths Among Doctors
calcium                  Calcium Uptake Data
cane                     Sugar-cane Disease Data
capability               Simulated Manufacturing Process Data
catsM                    Weight Data for Domestic Cats
cav                      Position of Muscle Caveolae
cd4                      CD4 Counts for HIV-Positive Patients
cd4.nested               Nested Bootstrap of cd4 data
channing                 Channing House Data
city                     Population of U.S. Cities
claridge                 Genetic Links to Left-handedness
cloth                    Number of Flaws in Cloth
co.transfer              Carbon Monoxide Transfer
coal                     Dates of Coal Mining Disasters
darwin                   Darwin's Plant Height Differences
dogs                     Cardiac Data for Domestic Dogs
downs.bc                 Incidence of Down's Syndrome in British Columbia
ducks                    Behavioral and Plumage Characteristics of Hybrid Ducks
fir                      Counts of Balsam-fir Seedlings
frets                    Head Dimensions in Brothers
grav                     Acceleration Due to Gravity
gravity                  Acceleration Due to Gravity
hirose                   Failure Time of PET Film
islay                    Jura Quartzite Azimuths on Islay
manaus                   Average Heights of the Rio Negro river at Manaus
melanoma                 Survival from Malignant Melanoma
motor                    Data from a Simulated Motorcycle Accident
neuro                    Neurophysiological Point Process Data
nitrofen                 Toxicity of Nitrofen in Aquatic Systems
nodal                    Nodal Involvement in Prostate Cancer
nuclear                  Nuclear Power Station Construction Data
paulsen                  Neurotransmission in Guinea Pig Brains
poisons                  Animal Survival Times
polar                    Pole Positions of New Caledonian Laterites
remission                Cancer Remission and Cell Activity
salinity                 Water Salinity and River Discharge
survival                 Survival of Rats after Radiation Doses
tau                      Tau Particle Decay Modes
tuna                     Tuna Sighting Data
urine                    Urine Analysis Data
wool                     Australian Relative Wool Prices

Data sets in package ‘broom’:

argument_glossary        Allowed argument names in tidiers
column_glossary          Allowed column names in tidied tibbles

Data sets in package ‘carData’:

AMSsurvey                American Math Society Survey Data
Adler                    Experimenter Expectations
Angell                   Moral Integration of American Cities
Anscombe                 U. S. State Public-School Expenditures
Arrests                  Arrests for Marijuana Possession
BEPS                     British Election Panel Study
Baumann                  Methods of Teaching Reading Comprehension
Bfox                     Canadian Women's Labour-Force Participation
Blackmore                Exercise Histories of Eating-Disordered and Control Subjects
Burt                     Fraudulent Data on IQs of Twins Raised Apart
CES11                    2011 Canadian National Election Study, With Attitude Toward Abortion
CanPop                   Canadian Population Data
Chile                    Voting Intentions in the 1988 Chilean Plebiscite
Chirot                   The 1907 Romanian Peasant Rebellion
Cowles                   Cowles and Davis's Data on Volunteering
Davis                    Self-Reports of Height and Weight
DavisThin                Davis's Data on Drive for Thinness
Depredations             Minnesota Wolf Depredation Data
Duncan                   Duncan's Occupational Prestige Data
Ericksen                 The 1980 U.S. Census Undercount
Florida                  Florida County Voting
Freedman                 Crowding and Crime in U. S. Metropolitan Areas
Friendly                 Format Effects on Recall
GSSvocab                 Data from the General Social Survey (GSS) from the National Opinion Research Center of the University of Chicago.
Ginzberg                 Data on Depression
Greene                   Refugee Appeals
Guyer                    Anonymity and Cooperation
Hartnagel                Canadian Crime-Rates Time Series
Highway1                 Highway Accidents
KosteckiDillon           Treatment of Migraine Headaches
Leinhardt                Data on Infant-Mortality
LoBD                     Cancer drug data use to provide an example of the
                         use of the skew power distributions.
Mandel                   Contrived Collinear Data
Migration                Canadian Interprovincial Migration Data
Moore                    Status, Authoritarianism, and Conformity
MplsDemo                 Minneapolis Demographic Data 2015, by Neighborhood
MplsStops                Minneapolis Police Department 2017 Stop Data
Mroz                     U.S. Women's Labor-Force Participation
OBrienKaiser             O'Brien and Kaiser's Repeated-Measures Data
Ornstein                 Interlocking Directorates Among Major Canadian Firms
Pottery                  Chemical Composition of Pottery
Prestige                 Prestige of Canadian Occupations
Quartet                  Four Regression Datasets
Robey                    Fertility and Contraception
Rossi                    Rossi et al.'s Criminal Recidivism Data
SLID                     Survey of Labour and Income Dynamics
Sahlins                  Agricultural Production in Mazulu Village
Salaries                 Salaries for Professors
Soils                    Soil Compositions of Physical and Chemical Characteristics
States                   Education and Related Statistics for the U.S. States
TitanicSurvival          Survival of Passengers on the Titanic
Transact                 Transaction data
UN                       National Statistics from the United Nations, Mostly From 2009-2011
UN98                     United Nations Social Indicators Data 1998]
USPop                    Population of the United States
Vocab                    Vocabulary and Education
WVS                      World Values Surveys
WeightLoss               Weight Loss Data
Wells                    Well Switching in Bangladesh
Womenlf                  Canadian Women's Labour-Force Participation
Wong                     Post-Coma Recovery of IQ
Wool                     Wool data

Data sets in package ‘caret’:

GermanCredit             German Credit Data
Sacramento               Sacramento CA Home Prices
absorp (tecator)         Fat, Water and Protein Content of Meat Samples
bbbDescr (BloodBrain)    Blood Brain Barrier Data
cars                     Kelly Blue Book resale data for 2005 model year GM cars
cox2Class (cox2)         COX-2 Activity Data
cox2Descr (cox2)         COX-2 Activity Data
cox2IC50 (cox2)          COX-2 Activity Data
dhfr                     Dihydrofolate Reductase Inhibitors Data
endpoints (tecator)      Fat, Water and Protein Content of Meat Samples
fattyAcids (oil)         Fatty acid composition of commercial oils
logBBB (BloodBrain)      Blood Brain Barrier Data
mdrrClass (mdrr)         Multidrug Resistance Reversal (MDRR) Agent Data
mdrrDescr (mdrr)         Multidrug Resistance Reversal (MDRR) Agent Data
oilType (oil)            Fatty acid composition of commercial oils
potteryClass (pottery)   Pottery from Pre-Classical Sites in Italy
scat                     Morphometric Data on Scat
scat_orig (scat)         Morphometric Data on Scat
segmentationData         Cell Body Segmentation

Data sets in package ‘cluster’:

agriculture              European Union Agricultural Workforces
animals                  Attributes of Animals
chorSub                  Subset of C-horizon of Kola Data
flower                   Flower Characteristics
plantTraits              Plant Species Traits Data
pluton                   Isotopic Composition Plutonium Batches
ruspini                  Ruspini Data
votes.repub              Votes for Republican Candidate in Presidential Elections
xclara                   Bivariate Data Set with 3 Clusters

Data sets in package ‘colorspace’:

USSouthPolygon           Polygon for County Map of US South States: Alabama, Georgia, and South Carolina
max_chroma_table         Compute Maximum Chroma for Given Hue and Luminance in HCL

Data sets in package ‘datasets’:

AirPassengers            Monthly Airline Passenger Numbers 1949-1960
BJsales                  Sales Data with Leading Indicator
BJsales.lead (BJsales)   Sales Data with Leading Indicator
BOD                      Biochemical Oxygen Demand
CO2                      Carbon Dioxide Uptake in Grass Plants
ChickWeight              Weight versus age of chicks on different diets
DNase                    Elisa assay of DNase
EuStockMarkets           Daily Closing Prices of Major European Stock Indices, 1991-1998
Formaldehyde             Determination of Formaldehyde
HairEyeColor             Hair and Eye Color of Statistics Students
Harman23.cor             Harman Example 2.3
Harman74.cor             Harman Example 7.4
Indometh                 Pharmacokinetics of Indomethacin
InsectSprays             Effectiveness of Insect Sprays
JohnsonJohnson           Quarterly Earnings per Johnson & Johnson Share
LakeHuron                Level of Lake Huron 1875-1972
LifeCycleSavings         Intercountry Life-Cycle Savings Data
Loblolly                 Growth of Loblolly pine trees
Nile                     Flow of the River Nile
Orange                   Growth of Orange Trees
OrchardSprays            Potency of Orchard Sprays
PlantGrowth              Results from an Experiment on Plant Growth
Puromycin                Reaction Velocity of an Enzymatic Reaction
Seatbelts                Road Casualties in Great Britain 1969-84
Theoph                   Pharmacokinetics of Theophylline
Titanic                  Survival of passengers on the Titanic
ToothGrowth              The Effect of Vitamin C on Tooth Growth in Guinea Pigs
UCBAdmissions            Student Admissions at UC Berkeley
UKDriverDeaths           Road Casualties in Great Britain 1969-84
UKgas                    UK Quarterly Gas Consumption
USAccDeaths              Accidental Deaths in the US 1973-1978
USArrests                Violent Crime Rates by US State
USJudgeRatings           Lawyers' Ratings of State Judges in the US Superior Court
USPersonalExpenditure    Personal Expenditure Data
UScitiesD                Distances Between European Cities and Between US Cities
VADeaths                 Death Rates in Virginia (1940)
WWWusage                 Internet Usage per Minute
WorldPhones              The World's Telephones
ability.cov              Ability and Intelligence Tests
airmiles                 Passenger Miles on Commercial US Airlines, 1937-1960
airquality               New York Air Quality Measurements
anscombe                 Anscombe's Quartet of 'Identical' Simple Linear Regressions
attenu                   The Joyner-Boore Attenuation Data
attitude                 The Chatterjee-Price Attitude Data
austres                  Quarterly Time Series of the Number of Australian Residents
beaver1 (beavers)        Body Temperature Series of Two Beavers
beaver2 (beavers)        Body Temperature Series of Two Beavers
cars                     Speed and Stopping Distances of Cars
chickwts                 Chicken Weights by Feed Type
co2                      Mauna Loa Atmospheric CO2 Concentration
crimtab                  Student's 3000 Criminals Data
discoveries              Yearly Numbers of Important Discoveries
esoph                    Smoking, Alcohol and (O)esophageal Cancer
euro                     Conversion Rates of Euro Currencies
euro.cross (euro)        Conversion Rates of Euro Currencies
eurodist                 Distances Between European Cities and Between US Cities
faithful                 Old Faithful Geyser Data
fdeaths (UKLungDeaths)   Monthly Deaths from Lung Diseases in the UK
freeny                   Freeny's Revenue Data
freeny.x (freeny)        Freeny's Revenue Data
freeny.y (freeny)        Freeny's Revenue Data
infert                   Infertility after Spontaneous and Induced Abortion
iris                     Edgar Anderson's Iris Data
iris3                    Edgar Anderson's Iris Data
islands                  Areas of the World's Major Landmasses
ldeaths (UKLungDeaths)   Monthly Deaths from Lung Diseases in the UK
lh                       Luteinizing Hormone in Blood Samples
longley                  Longley's Economic Regression Data
lynx                     Annual Canadian Lynx trappings 1821-1934
mdeaths (UKLungDeaths)   Monthly Deaths from Lung Diseases in the UK
morley                   Michelson Speed of Light Data
mtcars                   Motor Trend Car Road Tests
nhtemp                   Average Yearly Temperatures in New Haven
nottem                   Average Monthly Temperatures at Nottingham, 1920-1939
npk                      Classical N, P, K Factorial Experiment
occupationalStatus       Occupational Status of Fathers and their Sons
precip                   Annual Precipitation in US Cities
presidents               Quarterly Approval Ratings of US Presidents
pressure                 Vapor Pressure of Mercury as a Function of Temperature
quakes                   Locations of Earthquakes off Fiji
randu                    Random Numbers from Congruential Generator RANDU
rivers                   Lengths of Major North American Rivers
rock                     Measurements on Petroleum Rock Samples
sleep                    Student's Sleep Data
stack.loss (stackloss)   Brownlee's Stack Loss Plant Data
stack.x (stackloss)      Brownlee's Stack Loss Plant Data
stackloss                Brownlee's Stack Loss Plant Data
state.abb (state)        US State Facts and Figures
state.area (state)       US State Facts and Figures
state.center (state)     US State Facts and Figures
state.division (state)   US State Facts and Figures
state.name (state)       US State Facts and Figures
state.region (state)     US State Facts and Figures
state.x77 (state)        US State Facts and Figures
sunspot.month            Monthly Sunspot Data, from 1749 to "Present"
sunspot.year             Yearly Sunspot Data, 1700-1988
sunspots                 Monthly Sunspot Numbers, 1749-1983
swiss                    Swiss Fertility and Socioeconomic Indicators (1888) Data
treering                 Yearly Treering Data, -6000-1979
trees                    Diameter, Height and Volume for Black Cherry Trees
uspop                    Populations Recorded by the US Census
volcano                  Topographic Information on Auckland's Maunga Whau Volcano
warpbreaks               The Number of Breaks in Yarn during Weaving
women                    Average Heights and Weights for American Women

Data sets in package ‘dplyr’:

band_instruments         Band membership
band_instruments2        Band membership
band_members             Band membership
nasa                     NASA spatio-temporal data
starwars                 Starwars characters
storms                   Storm tracks data

Data sets in package ‘forcats’:

gss_cat                  A sample of categorical variables from the General Social survey

Data sets in package ‘gam’:

gam.data                 Simulated dataset for gam
gam.newdata              Simulated dataset for gam
kyphosis                 A classic example dataset for GAMs

Data sets in package ‘gapminder’:

continent_colors         Gapminder color schemes.
country_codes            Country codes
country_colors           Gapminder color schemes.
gapminder                Gapminder data.
gapminder_unfiltered     Gapminder data, unfiltered.

Data sets in package ‘GGally’:

australia_PISA2012       Programme for International Student Assesment (PISA) 2012 Data for Australia
flea                     Historical data used for classification examples.
happy                    Data related to happiness from the General Social Survey, 1972-2006.
nasa                     Data from the Data Expo JSM 2006.
pigs                     United Kingdom Pig Production
psychademic              UCLA canonical correlation analysis data
twitter_spambots         Twitter spambots

Data sets in package ‘ggplot2’:

diamonds                 Prices of 50,000 round cut diamonds
economics                US economic time series
economics_long           US economic time series
faithfuld                2d density estimate of Old Faithful data
luv_colours              'colors()' in Luv space
midwest                  Midwest demographics
mpg                      Fuel economy data from 1999 and 2008 for 38 popular models of car
msleep                   An updated and expanded version of the mammals sleep dataset
presidential             Terms of 11 presidents from Eisenhower to Obama
seals                    Vector field of seal movements
txhousing                Housing sales in TX

Data sets in package ‘glmnet’:

beta_CVX (CVXResults)    Simulated data for the glmnet vignette
x (BinomialExample)      Simulated data for the glmnet vignette
x (CoxExample)           Simulated data for the glmnet vignette
x (MultiGaussianExample) Simulated data for the glmnet vignette
x (MultinomialExample)   Simulated data for the glmnet vignette
x (PoissonExample)       Simulated data for the glmnet vignette
x (QuickStartExample)    Simulated data for the glmnet vignette
x (SparseExample)        Simulated data for the glmnet vignette
y (BinomialExample)      Simulated data for the glmnet vignette
y (CoxExample)           Simulated data for the glmnet vignette
y (MultiGaussianExample) Simulated data for the glmnet vignette
y (MultinomialExample)   Simulated data for the glmnet vignette
y (PoissonExample)       Simulated data for the glmnet vignette
y (QuickStartExample)    Simulated data for the glmnet vignette
y (SparseExample)        Simulated data for the glmnet vignette

Data sets in package ‘grpreg’:

Birthwt                  Risk Factors Associated with Low Infant Birth Weight
Lung                     VA lung cancer data set
birthwt.grpreg           Risk Factors Associated with Low Infant Birth Weight

Data sets in package ‘htmlTable’:

SCB                      Average age in Sweden

Data sets in package ‘ipred’:

DLBCL                    Diffuse Large B-Cell Lymphoma
GlaucomaMVF              Glaucoma Database
Smoking                  Smoking Styles
dystrophy                Detection of muscular dystrophy carriers.

Data sets in package ‘ISLR’:

Auto                     Auto Data Set
Caravan                  The Insurance Company (TIC) Benchmark
Carseats                 Sales of Child Car Seats
College                  U.S. News and World Report's College Data
Credit                   Credit Card Balance Data
Default                  Credit Card Default Data
Hitters                  Baseball Data
Khan                     Khan Gene Data
NCI60                    NCI 60 Data
OJ                       Orange Juice Data
Portfolio                Portfolio Data
Smarket                  S&P Stock Market Data
Wage                     Mid-Atlantic Wage Data
Weekly                   Weekly S&P Stock Market Data

Data sets in package ‘kernlab’:

income                   Income Data
musk                     Musk data set
promotergene             E. coli promoter gene sequences (DNA)
reuters                  Reuters Text Data
rlabels (reuters)        Reuters Text Data
spam                     Spam E-mail Database
spirals                  Spirals Dataset
ticdata                  The Insurance Company Data

Data sets in package ‘lars’:

diabetes                 Blood and other measurements in diabetics

Data sets in package ‘lattice’:

USMortality              Mortality Rates in US by Cause and Gender
USRegionalMortality      Mortality Rates in US by Cause and Gender
barley                   Yield data from a Minnesota barley trial
environmental            Atmospheric environmental conditions in New York City
ethanol                  Engine exhaust fumes from burning ethanol
melanoma                 Melanoma skin cancer incidence
singer                   Heights of New York Choral Society singers

Data sets in package ‘latticeExtra’:

EastAuClimate            Climate of the East Coast of Australia
SeatacWeather            Daily Rainfall and Temperature at the
                         Seattle-Tacoma Airport
USAge.df                 US national population estimates
USAge.table              US national population estimates
USCancerRates            Rate of Death Due to Cancer in US Counties
ancestry                 Modal ancestry by County according to US 2000 Census
biocAccess               Hourly access attempts to Bioconductor website
gvhd10                   Flow cytometry data from five samples from a patient
postdoc                  Reasons for Taking First Postdoctoral Appointment

Data sets in package ‘lava’:

bmd                      Longitudinal Bone Mineral Density Data (Wide format)
bmidata                  Data
brisa                    Simulated data
calcium                  Longitudinal Bone Mineral Density Data
hubble                   Hubble data
hubble2                  Hubble data
indoorenv                Data
missingdata              Missing data example
nldata                   Example data (nonlinear model)
nsem                     Example SEM data (nonlinear)
semdata                  Example SEM data
serotonin                Serotonin data
serotonin2               Data
twindata                 Twin menarche data

Data sets in package ‘lda’:

cora.cites               A subset of the Cora dataset of scientific documents.
cora.documents           A subset of the Cora dataset of scientific documents.
cora.titles              A subset of the Cora dataset of scientific documents.
cora.vocab               A subset of the Cora dataset of scientific documents.
newsgroup.label.map      A collection of newsgroup messages with classes.
newsgroup.test.documents A collection of newsgroup messages with classes.
newsgroup.test.labels    A collection of newsgroup messages with classes.
newsgroup.train.documents A collection of newsgroup messages with classes.
newsgroup.train.labels   A collection of newsgroup messages with classes.
newsgroup.vocab          A collection of newsgroup messages with classes.
poliblog.documents       A collection of political blogs with ratings.
poliblog.ratings         A collection of political blogs with ratings.
poliblog.vocab           A collection of political blogs with ratings.
sampson                  Sampson monk data

Data sets in package ‘lme4’:

Arabidopsis              Arabidopsis clipping/fertilization data
Dyestuff                 Yield of dyestuff by batch
Dyestuff2                Yield of dyestuff by batch
InstEval                 University Lecture/Instructor Evaluations by Students at ETH
Pastes                   Paste strength by batch and cask
Penicillin               Variation in penicillin testing
VerbAgg                  Verbal Aggression item responses
cake                     Breakage Angle of Chocolate Cakes
cbpp                     Contagious bovine pleuropneumonia
grouseticks              Data on red grouse ticks from Elston et al. 2001
grouseticks_agg (grouseticks) Data on red grouse ticks from Elston et al. 2001
sleepstudy               Reaction times in a sleep deprivation study

Data sets in package ‘locfit’:

ais                      Australian Institute of Sport Dataset
bad                      Example dataset for bandwidth selection
border                   Cricket Batting Dataset
chemdiab                 Chemical Diabetes Dataset
claw54                   Claw Dataset
cldem                    Example data set for classification
cltest                   Test dataset for classification
cltrain                  Training dataset for classification
co2                      Carbon Dioxide Dataset
diab                     Exhaust emissions
ethanol                  Exhaust emissions
geyser                   Old Faithful Geyser Dataset
geyser.round             Discrete Old Faithful Geyser Dataset
heart                    Survival Times of Heart Transplant Recipients
insect                   Insect Dataset
iris                     Fisher's Iris Data (subset)
kangaroo                 Kangaroo skull measurements dataset
livmet                   liver Metastases dataset
mcyc                     Acc(De?)celeration of a Motorcycle Hitting a Wall
mine                     Fracture Counts in Coal Mines
mmsamp                   Test dataset for minimax Local Regression
morths                   Henderson and Sheppard Mortality Dataset
penny                    Penny Thickness Dataset
spencer                  Spencer's Mortality Dataset
stamp                    Stamp Thickness Dataset
trimod                   Generated sample from a bivariate trimodal normal mixture

Data sets in package ‘lubridate’:

lakers                   Lakers 2008-2009 basketball data set

Data sets in package ‘maptools’:

SplashDams               Data for Splash Dams in western Oregon
h1pl (gpcholes)          Hisaji Ono's lake/hole problem
h2pl (gpcholes)          Hisaji Ono's lake/hole problem
state.vbm                US State Visibility Based Map
wrld_simpl               Simplified world country polygons

Data sets in package ‘MASS’:

Aids2                    Australian AIDS Survival Data
Animals                  Brain and Body Weights for 28 Species
Boston                   Housing Values in Suburbs of Boston
Cars93                   Data from 93 Cars on Sale in the USA in 1993
Cushings                 Diagnostic Tests on Patients with Cushing's Syndrome
DDT                      DDT in Kale
GAGurine                 Level of GAG in Urine of Children
Insurance                Numbers of Car Insurance claims
Melanoma                 Survival from Malignant Melanoma
OME                      Tests of Auditory Perception in Children with OME
Pima.te                  Diabetes in Pima Indian Women
Pima.tr                  Diabetes in Pima Indian Women
Pima.tr2                 Diabetes in Pima Indian Women
Rabbit                   Blood Pressure in Rabbits
Rubber                   Accelerated Testing of Tyre Rubber
SP500                    Returns of the Standard and Poors 500
Sitka                    Growth Curves for Sitka Spruce Trees in 1988
Sitka89                  Growth Curves for Sitka Spruce Trees in 1989
Skye                     AFM Compositions of Aphyric Skye Lavas
Traffic                  Effect of Swedish Speed Limits on Accidents
UScereal                 Nutritional and Marketing Information on US Cereals
UScrime                  The Effect of Punishment Regimes on Crime Rates
VA                       Veteran's Administration Lung Cancer Trial
abbey                    Determinations of Nickel Content
accdeaths                Accidental Deaths in the US 1973-1978
anorexia                 Anorexia Data on Weight Change
bacteria                 Presence of Bacteria after Drug Treatments
beav1                    Body Temperature Series of Beaver 1
beav2                    Body Temperature Series of Beaver 2
biopsy                   Biopsy Data on Breast Cancer Patients
birthwt                  Risk Factors Associated with Low Infant Birth Weight
cabbages                 Data from a cabbage field trial
caith                    Colours of Eyes and Hair of People in Caithness
cats                     Anatomical Data from Domestic Cats
cement                   Heat Evolved by Setting Cements
chem                     Copper in Wholemeal Flour
coop                     Co-operative Trial in Analytical Chemistry
cpus                     Performance of Computer CPUs
crabs                    Morphological Measurements on Leptograpsus Crabs
deaths                   Monthly Deaths from Lung Diseases in the UK
drivers                  Deaths of Car Drivers in Great Britain 1969-84
eagles                   Foraging Ecology of Bald Eagles
epil                     Seizure Counts for Epileptics
farms                    Ecological Factors in Farm Management
fgl                      Measurements of Forensic Glass Fragments
forbes                   Forbes' Data on Boiling Points in the Alps
galaxies                 Velocities for 82 Galaxies
gehan                    Remission Times of Leukaemia Patients
genotype                 Rat Genotype Data
geyser                   Old Faithful Geyser Data
gilgais                  Line Transect of Soil in Gilgai Territory
hills                    Record Times in Scottish Hill Races
housing                  Frequency Table from a Copenhagen Housing Conditions Survey
immer                    Yields from a Barley Field Trial
leuk                     Survival Times and White Blood Counts for Leukaemia Patients
mammals                  Brain and Body Weights for 62 Species of Land Mammals
mcycle                   Data from a Simulated Motorcycle Accident
menarche                 Age of Menarche in Warsaw
michelson                Michelson's Speed of Light Data
minn38                   Minnesota High School Graduates of 1938
motors                   Accelerated Life Testing of Motorettes
muscle                   Effect of Calcium Chloride on Muscle Contraction in Rat Hearts
newcomb                  Newcomb's Measurements of the Passage Time of Light
nlschools                Eighth-Grade Pupils in the Netherlands
npk                      Classical N, P, K Factorial Experiment
npr1                     US Naval Petroleum Reserve No. 1 data
oats                     Data from an Oats Field Trial
painters                 The Painter's Data of de Piles
petrol                   N. L. Prater's Petrol Refinery Data
phones                   Belgium Phone Calls 1950-1973
quine                    Absenteeism from School in Rural New South Wales
road                     Road Accident Deaths in US States
rotifer                  Numbers of Rotifers by Fluid Density
ships                    Ships Damage Data
shoes                    Shoe wear data of Box, Hunter and Hunter
shrimp                   Percentage of Shrimp in Shrimp Cocktail
shuttle                  Space Shuttle Autolander Problem
snails                   Snail Mortality Data
steam                    The Saturated Steam Pressure Data
stormer                  The Stormer Viscometer Data
survey                   Student Survey Data
synth.te                 Synthetic Classification Problem
synth.tr                 Synthetic Classification Problem
topo                     Spatial Topographic Data
waders                   Counts of Waders at 15 Sites in South Africa
whiteside                House Insulation: Whiteside's Data
wtloss                   Weight Loss Data from an Obese Patient

Data sets in package ‘Matrix’:

CAex                     Albers' example Matrix with "Difficult" Eigen Factorization
KNex                     Koenker-Ng Example Sparse Model Matrix and Response Vector
USCounties               USCounties Contiguity Matrix

Data sets in package ‘mgcv’:

columb                   Reduced version of Columbus OH crime data
columb.polys             Reduced version of Columbus OH crime data

Data sets in package ‘ModelMetrics’:

testDF                   Test data

Data sets in package ‘modelr’:

heights                  Height and income data.
sim1                     Simple simulated datasets
sim2                     Simple simulated datasets
sim3                     Simple simulated datasets
sim4                     Simple simulated datasets

Data sets in package ‘multcomp’:

adevent                  Adverse Events Data
cholesterol              Cholesterol Reduction Data Set
cml                      Chronic Myelogenous Leukemia survival data.
detergent                Detergent Durability Data Set
fattyacid                Fatty Acid Content of Bacillus simplex.
litter                   Litter Weights Data Set
mtept                    Multiple Endpoints Data
recovery                 Recovery Time Data Set
sbp                      Systolic Blood Pressure Data
trees513                 Frankonian Tree Damage Data
waste                    Industrial Waste Data Set

Data sets in package ‘networkD3’:

MisLinks                 Les Miserables character links
MisNodes                 Les Miserables character nodes
SchoolsJournals          Edge list of REF (2014) journal submissions for
                         Politics and International Relations

Data sets in package ‘nlme’:

Alfalfa                  Split-Plot Experiment on Varieties of Alfalfa
Assay                    Bioassay on Cell Culture Plate
BodyWeight               Rat weight over time for different diets
Cefamandole              Pharmacokinetics of Cefamandole
Dialyzer                 High-Flux Hemodialyzer
Earthquake               Earthquake Intensity
Fatigue                  Cracks caused by metal fatigue
Gasoline                 Refinery yield of gasoline
Glucose                  Glucose levels over time
Glucose2                 Glucose Levels Following Alcohol Ingestion
Gun                      Methods for firing naval guns
IGF                      Radioimmunoassay of IGF-I Protein
Machines                 Productivity Scores for Machines and Workers
MathAchSchool            School demographic data for MathAchieve
MathAchieve              Mathematics achievement scores
Meat                     Tenderness of meat
Milk                     Protein content of cows' milk
Muscle                   Contraction of heart muscle sections
Nitrendipene             Assay of nitrendipene
Oats                     Split-plot Experiment on Varieties of Oats
Orthodont                Growth curve data on an orthdontic measurement
Ovary                    Counts of Ovarian Follicles
Oxboys                   Heights of Boys in Oxford
Oxide                    Variability in Semiconductor Manufacturing
PBG                      Effect of Phenylbiguanide on Blood Pressure
Phenobarb                Phenobarbitol Kinetics
Pixel                    X-ray pixel intensities over time
Quinidine                Quinidine Kinetics
Rail                     Evaluation of Stress in Railway Rails
RatPupWeight             The weight of rat pups
Relaxin                  Assay for Relaxin
Remifentanil             Pharmacokinetics of remifentanil
Soybean                  Growth of soybean plants
Spruce                   Growth of Spruce Trees
Tetracycline1            Pharmacokinetics of tetracycline
Tetracycline2            Pharmacokinetics of tetracycline
Wafer                    Modeling of Analog MOS Circuits
Wheat                    Yields by growing conditions
Wheat2                   Wheat Yield Trials
bdf                      Language scores
ergoStool                Ergometrics experiment with stool types

Data sets in package ‘pbkrtest’:

beets                    beets data
budworm                  budworm data

Data sets in package ‘pls’:

gasoline                 Octane numbers and NIR spectra of gasoline
mayonnaise               NIR measurements and oil types of mayonnaise
oliveoil                 Sensory and physico-chemical data of olive oils
yarn                     NIR spectra and density measurements of PET yarns

Data sets in package ‘plyr’:

baseball                 Yearly batting records for all major league baseball players
ozone                    Monthly ozone measurements over Central America.

Data sets in package ‘pROC’:

aSAH                     Subarachnoid hemorrhage data

Data sets in package ‘psych’:

Bechtoldt                Seven data sets showing a bifactor solution.
Bechtoldt.1              Seven data sets showing a bifactor solution.
Bechtoldt.2              Seven data sets showing a bifactor solution.
Chen (Schmid)            12 variables created by Schmid and Leiman to show the Schmid-Leiman Transformation
Dwyer                    8 cognitive variables used by Dwyer for an example.
Garcia (GSBE)            Data from the sexism (protest) study of Garcia, Schmitt, Branscome, and Ellemers (2010)
Gleser                   Example data from Gleser, Cronbach and Rajaratnam (1965) to show basic principles of generalizability theory.
Gorsuch                  Example data set from Gorsuch (1997) for an example factor extension.
Harman.5                 Five data sets from Harman (1967). 9 cognitive variables from Holzinger and 8 emotional variables from Burt
Harman.8                 Five data sets from Harman (1967). 9 cognitive variables from Holzinger and 8 emotional variables from Burt
Harman.Burt (Harman)     Five data sets from Harman (1967). 9 cognitive variables from Holzinger and 8 emotional variables from Burt
Harman.Holzinger (Harman)Five data sets from Harman (1967). 9 cognitive variables from Holzinger and 8 emotional variables from Burt
Harman.political         Five data sets from Harman (1967). 9 cognitive variables from Holzinger and 8 emotional variables from Burt
Holzinger                Seven data sets showing a bifactor solution.
Holzinger.9              Seven data sets showing a bifactor solution.
Reise                    Seven data sets showing a bifactor solution.
Schmid                   12 variables created by Schmid and Leiman to show the Schmid-Leiman Transformation
Schutz                   The Schutz correlation matrix example from Shapiro and ten Berge
Tal.Or                   Data set testing causal direction in presumed media influence
Tal_Or                   Data set testing causal direction in presumed media influence
Thurstone                Seven data sets showing a bifactor solution.
Thurstone.33             Seven data sets showing a bifactor solution.
Thurstone.9              Seven data sets showing a bifactor solution.
Tucker                   9 Cognitive variables discussed by Tucker and Lewis (1973)
West (Schmid)            12 variables created by Schmid and Leiman to show the Schmid-Leiman Transformation
ability                  16 ability items scored as correct or incorrect.
affect                   Two data sets of affect and arousal scores as a function of personality and movie conditions
all.income (income)      US family income from US census 2008
bfi                      25 Personality items representing 5 factors
bfi.dictionary           25 Personality items representing 5 factors
blant                    A 29 x 29 matrix that produces weird factor analytic results
blot                     Bond's Logical Operations Test - BLOT
bock.table (bock)        Bock and Liberman (1970) data set of 1000 observations of the LSAT
burt                     11 emotional variables from Burt (1915)
cattell                  12 cognitive variables from Cattell (1963)
cities                   Distances between 11 US cities
city.location (cities)   Distances between 11 US cities
cubits                   Galton's example of the relationship between height and 'cubit' or forearm length
cushny                   A data set from Cushny and Peebles (1905) on the effect of three drugs on hours of sleep, used by Student (1908)
epi                      Eysenck Personality Inventory (EPI) data for 3570 participants
epi.bfi                  13 personality scales from the Eysenck Personality Inventory and Big 5 inventory
epi.dictionary           Eysenck Personality Inventory (EPI) data for 3570 participants
epiR                     Eysenck Personality Inventory (EPI) data for 3570 participants
galton                   Galton's Mid parent child height data
heights                  A data.frame of the Galton (1888) height and cubit data set.
income                   US family income from US census 2008
iqitems                  16 multiple choice IQ items
lsat6 (bock)             Bock and Liberman (1970) data set of 1000 observations of the LSAT
lsat7 (bock)             Bock and Liberman (1970) data set of 1000 observations of the LSAT
msq                      75 mood items from the Motivational State Questionnaire for 3896 participants
msqR                     75 mood items from the Motivational State Questionnaire for 3032 unique participants
neo                      NEO correlation matrix from the NEO_PI_R manual
peas                     Galton's Peas
sai                      State Anxiety data from the PMC lab over multiple occasions.
sai.dictionary           State Anxiety data from the PMC lab over multiple occasions.
sat.act                  3 Measures of ability: SATV, SATQ, ACT
schmid.leiman (Schmid)   12 variables created by Schmid and Leiman to show the Schmid-Leiman Transformation
spi                      A sample from the SAPA Personality Inventory including an item dictionary and scoring keys.
spi.dictionary           A sample from the SAPA Personality Inventory including an item dictionary and scoring keys.
spi.keys                 A sample from the SAPA Personality Inventory including an item dictionary and scoring keys.
tai                      State Anxiety data from the PMC lab over multiple occasions.
veg (vegetables)         Paired comparison of preferences for 9 vegetables
withinBetween            An example of the distinction between within group and between group correlations

Data sets in package ‘quantreg’:

Bosco                    Boscovich Data
CobarOre                 Cobar Ore data
Mammals                  Garland(1983) Data on Running Speed of Mammals
Peirce                   C.S. Peirce's Auditory Response Data
barro                    Barro Data
engel                    Engel Data
gasprice                 Time Series of US Gasoline Prices
uis                      UIS Drug Treatment study data

Data sets in package ‘randomForest’:

imports85                The Automobile Data

Data sets in package ‘recipes’:

Smithsonian              Smithsonian Museums
biomass                  Biomass Data
covers                   Raw Cover Type Data
credit_data              Credit Data
okc                      OkCupid Data

Data sets in package ‘reshape’:

french_fries             Sensory data from a french fries experiment
smiths                   Demo data describing the Smiths
tips                     Tipping data

Data sets in package ‘reshape2’:

french_fries             Sensory data from a french fries experiment.
smiths                   Demo data describing the Smiths.
tips                     Tipping data

Data sets in package ‘rpart’:

car.test.frame           Automobile Data from 'Consumer Reports' 1990
car90                    Automobile Data from 'Consumer Reports' 1990
cu.summary               Automobile Data from 'Consumer Reports' 1990
kyphosis                 Data on Children who have had Corrective Spinal Surgery
solder                   Soldering of Components on Printed-Circuit Boards
solder.balance (solder)  Soldering of Components on Printed-Circuit Boards
stagec                   Stage C Prostate Cancer

Data sets in package ‘RSSL’:

diabetes                 diabetes data for unit testing
svmlin_example           Test data from the svmlin implementation
testdata                 Example semi-supervised problem
wdbc                     wdbc data for unit testing

Data sets in package ‘sandwich’:

InstInnovation           Innovation and Institutional Ownership
Investment               US Investment Data
PetersenCL               Petersen's Simulated Data for Assessing Clustered Standard Errors
PublicSchools            US Expenditures for Public Schools

Data sets in package ‘sp’:

Rlogo                    Rlogo jpeg image
gt (Rlogo)               Rlogo jpeg image
meuse                    Meuse river data set
meuse.area               River Meuse outline
meuse.grid               Prediction Grid for Meuse Data Set
meuse.grid_ll            Prediction Grid for Meuse Data Set, geographical coordinates
meuse.riv                River Meuse outline

Data sets in package ‘SparseM’:

X (triogramX)            A Design Matrix for a Triogram Problem
lsq                      Least Squares Problems in Surveying

Data sets in package ‘splitstackshape’:

concat.test (concatenated)  Example Dataset with Concatenated Cells

Data sets in package ‘stringr’:

fruit                    Sample character vectors for practicing string manipulations.
sentences                Sample character vectors for practicing string manipulations.
words                    Sample character vectors for practicing string manipulations.

Data sets in package ‘survival’:

aml (leukemia)           Acute Myelogenous Leukemia survival data
bladder                  Bladder Cancer Recurrences
bladder1 (bladder)       Bladder Cancer Recurrences
bladder2 (bladder)       Bladder Cancer Recurrences
cancer                   NCCTG Lung Cancer Data
capacitor (reliability)  Reliability data sets
cgd                      Chronic Granulotamous Disease data
cgd0 (cgd)               Chronic Granulotomous Disease data
colon                    Chemotherapy for Stage B/C colon cancer
cracks (reliability)     Reliability data sets
diabetic                 Ddiabetic retinopathy
flchain                  Assay of serum free light chain for 7874 subjects.
genfan (reliability)     Reliability data sets
heart                    Stanford Heart Transplant data
ifluid (reliability)     Reliability data sets
imotor (reliability)     Reliability data sets
jasa (heart)             Stanford Heart Transplant data
jasa1 (heart)            Stanford Heart Transplant data
kidney                   Kidney catheter data
leukemia                 Acute Myelogenous Leukemia survival data
logan                    Data from the 1972-78 GSS data used by Logan
lung                     NCCTG Lung Cancer Data
mgus                     Monoclonal gammopathy data
mgus1 (mgus)             Monoclonal gammopathy data
mgus2                    Monoclonal gammopathy data
myeloid                  Acute myeloid leukemia
nwtco                    Data from the National Wilm's Tumor Study
ovarian                  Ovarian Cancer Survival Data
pbc                      Mayo Clinic Primary Biliary Cirrhosis Data
pbcseq (pbc)             Mayo Clinic Primary Biliary Cirrhosis, sequential data
rats                     Rat treatment data from Mantel et al
rats2 (rats)             Rat data from Gail et al.
retinopathy              Diabetic Retinopathy
rhDNase                  rhDNASE data set
solder                   Data from a soldering experiment
stanford2                More Stanford Heart Transplant data
survexp.mn (survexp)     Census Data Sets for the Expected Survival and Person Years Functions
survexp.us (survexp)     Census Data Sets for the Expected Survival and Person Years Functions
survexp.usr (survexp)    Census Data Sets for the Expected Survival and Person Years Functions
tobin                    Tobin's Tobit data
transplant               Liver transplant waiting list
turbine (reliability)    Reliability data sets
udca                     Data from a trial of usrodeoxycholic acid
udca1 (udca)             Data from a trial of usrodeoxycholic acid
udca2 (udca)             Data from a trial of usrodeoxycholic acid
uspop2                   Projected US Population
valveSeat (reliability)  Reliability data sets
veteran                  Veterans' Administration Lung Cancer study

Data sets in package ‘TH.data’:

GBSG2                    German Breast Cancer Study Group 2
GlaucomaM                Glaucoma Database
Westbc                   Breast Cancer Gene Expression
birds                    Habitat Suitability for Breeding Bird Communities
bodyfat                  Prediction of Body Fat by Skinfold Thickness, Circumferences, and Bone Breadths
geyser                   Old Faithful Geyser Data
mammoexp                 Mammography Experience Study
mn6.9                    I.Q. and attitude towards science
sphase                   S-phase Fraction of Tumor Cells
wpbc                     Wisconsin Prognostic Breast Cancer Data

Data sets in package ‘tidyr’:

billboard                Song rankings for billboard top 100 in the year 2000
construction             Completed construction in the US in 2018
fish_encounters          Fish encounters
population               World Health Organization TB data
relig_income             Pew religion and income survey
smiths                   Some data about the Smith family
table1                   Example tabular representations
table2                   Example tabular representations
table3                   Example tabular representations
table4a                  Example tabular representations
table4b                  Example tabular representations
table5                   Example tabular representations
us_rent_income           US rent and income data
who                      World Health Organization TB data
world_bank_pop           Population data from the world bank

Data sets in package ‘tm’:

acq                      50 Exemplary News Articles from the Reuters-21578 Data Set of Topic acq
crude                    20 Exemplary News Articles from the Reuters-21578 Data Set of Topic crude

Data sets in package ‘viridisLite’:

viridis.map              Original 'viridis'and 'cividis' color map

Data sets in package ‘wordcloud’:

SOTU                     United States State of the Union Addresses (2010 and 2011)

Data sets in package ‘xgboost’:

agaricus.test            Test part from Mushroom Data Set
agaricus.train           Training part from Mushroom Data Set

Data sets in package ‘xtable’:

tli                      Math scores from Texas Assessment of Academic Skills (TAAS)

Friday, June 7, 2019

Marking rubric examples

1. Judging chocolate cookies [1]



2. Judging group work [2]



2.1 Features of a good rubric

  • Clearly worded and easy to understand from both a student and staff perspective
  • Sufficiently concise to not be overwhelming to students and staff
  • Drafted from the learning outcomes set
  • Accurately represents the content delivered to students
  • Measures what it is intended to measure: validity
  • Produces stable and consistent results every time it is used: reliability

2.2 What goes into a rubric?
Rubrics are presented in a table format and usually include:
  • A description of the task that is being evaluated
  • The criteria (row headings) being evaluated
  • A rating scale (column headings) describing levels of quality from excellent to poor
  • A description of each level of performance for each criterion (within each box of the table)

3. Judging writing [3]

There are two main types of rubrics, Analytic and Holistic.

Analytic Grading Rubrics
  • Analytic rubrics have different levels of achievement of performance criteria. 
  • Each level for each criterion has a precise descriptor of what students should demonstrate that they know and can do, in as observable and measurable terms as possible. 
  • The criteria are linked to outcomes for project/course.



Holistic Grading Rubrics

Holistic rubrics either put all the criteria descriptions together in one box for each performance level, as illustrated below or just list the criteria, each with a rating scale of, say, 1 to 4.



Tips on Using Rubrics Effectively

  • Develop a different rubric for each assignment. Although this takes time in the beginning, you’ll find that rubrics can be changed slightly or reused later.
  • Give students a copy of the rubric when you assign the performance task. Online, you can create the rubric in Desire2Learn and make it visible to students in the assignment description.
  • Rubrics need to be discussed with students to create a common understanding of expectations.
  • For paper submission, require students to attach the rubric to the assignment when they hand it in. Online you will use the Desire2Learn rubric to mark each assignment by clicking performance levels.
  • When you mark the assignment, circle or highlight the achieved level of performance for each criterion. This happens online with a simple mouse click.
  • Include any additional comments that do not fit within the rubric’s criteria. Online you can type these into a text field available for that purpose.
  • Decide upon a final grade for the assignment based on the rubric. Online, this mark is generated automatically by the system, but you can change it if you wish.
  • Return the rubric with the assignment. This happens automatically online in Desire2Learn.

References

1. The Advantages of Rubrics: Part One in a Five-Part Series, https://www.teachervision.com/advantages-rubrics-part-one-five-part-series Accessed date: 07th Jun 2019.
2. Grading Made Easy: Digital Tools to Create Rubrics, https://www.profweb.ca/en/publications/articles/grading-made-easy-digital-tools-to-create-rubrics, Accessed date: 07th Jun 2019
3. Grading Rubrics: Set Expectations, Make Feedback Delivery More Efficient, http://unbtls.ca/teachingtips/gradingrubrics.html, Accessed date: 07th Jun 2019.

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